Dolosigranulum savutiense sp. nov., isolated from human upper respiratory samples collected in Botswana
Four strains (MSK211, MSK294<sup>T</sup>, MSK312, MSK433) of a novel <i>Dolosigranulum</i> species were cultured from nasopharyngeal swabs collected from mother-infant dyads in southern Botswana. These strains grew optimally on tryptic soy agar with 5% sheep blood solid medium and in fastidious bacteria broth. Colonies on tryptic soy agar with 5% sheep blood agar appeared grey or white with a flat, smooth surface and variable alpha haemolysis. Cells were Gram-positive, non-spore-forming, non-motile cocci that lacked catalase or oxidase activity. Major fatty acids were C<sub>16 : 0</sub> (palmitic acid), C<sub>18 : 1 </sub>ω9<i>c</i> (oleic acid), and C<sub>18 : 0</sub> (stearic acid). Analyses of 16S rRNA gene sequences identified these strains as belonging to the genus <i>Dolosigranulum</i> (family <i>Carnobacteriaceae</i>), which currently contains only a single validly published species (<i>Dolosigranulum pigrum</i>). Whole-genome sequencing revealed that the genomes of these strains are 1.98-2.07 Mbp in size and have a G+C content of 39.6-39.9 mol%. Comparisons of these genomes to publicly available genomes of <i>D. pigrum</i> yielded average nucleotide identities and <i>in silico</i> DNA-DNA hybridization values of 92.3-92.9% and 49.1-51.4%, respectively. These results indicate that these strains represent a novel species of <i>Dolosigranulum</i>, for which we propose the name <i>Dolosigranulum savutiense</i> sp. nov., with the type strain MSK294<sup>T</sup> (=DSM 117171<sup>T</sup>=JCM 36673<sup>T</sup>).
Authors
- Jhoanna N. Aquino
- Sefelani Boiditswe (ORCID: https://orcid.org/0000-0003-0382-4243)
- Andrew P. Steenhoff (ORCID: https://orcid.org/0000-0001-9002-8207)
- Antonio Maldonado‐Barragán (ORCID: https://orcid.org/0000-0002-4775-346X)
- Elena B. Popowitch
- Jillian H. Hurst (ORCID: https://orcid.org/0000-0001-5079-9920)
- Matthew S. Kelly (ORCID: https://orcid.org/0000-0001-8819-2315)
- Mohamed Z. Patel (ORCID: https://orcid.org/0000-0002-4317-4284)
- Alp Kuzey Sozat
- Adrian J. Caiazzo
Institutions
- Children's Hospital of Philadelphia (US)
- University of Botswana (BW)
- Duke University (US)
Publication Details
- Journal
- INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- Published
- 2024-08-21
- DOI
- https://doi.org/10.1099/ijsem.0.006498
- Citations
- 5
- Primary Topic
- Genomics and Phylogenetic Studies
- Type
- article
- Field-Weighted Citation Impact
- 1.17
Funders
- Division of Microbiology and Infectious Diseases, National Institute of Allergy and Infectious Diseases