Dolosigranulum savutiense sp. nov., isolated from human upper respiratory samples collected in Botswana

Four strains (MSK211, MSK294<sup>T</sup>, MSK312, MSK433) of a novel <i>Dolosigranulum</i> species were cultured from nasopharyngeal swabs collected from mother-infant dyads in southern Botswana. These strains grew optimally on tryptic soy agar with 5% sheep blood solid medium and in fastidious bacteria broth. Colonies on tryptic soy agar with 5% sheep blood agar appeared grey or white with a flat, smooth surface and variable alpha haemolysis. Cells were Gram-positive, non-spore-forming, non-motile cocci that lacked catalase or oxidase activity. Major fatty acids were C<sub>16 : 0</sub> (palmitic acid), C<sub>18 : 1 </sub>ω9<i>c</i> (oleic acid), and C<sub>18 : 0</sub> (stearic acid). Analyses of 16S rRNA gene sequences identified these strains as belonging to the genus <i>Dolosigranulum</i> (family <i>Carnobacteriaceae</i>), which currently contains only a single validly published species (<i>Dolosigranulum pigrum</i>). Whole-genome sequencing revealed that the genomes of these strains are 1.98-2.07 Mbp in size and have a G+C content of 39.6-39.9 mol%. Comparisons of these genomes to publicly available genomes of <i>D. pigrum</i> yielded average nucleotide identities and <i>in silico</i> DNA-DNA hybridization values of 92.3-92.9% and 49.1-51.4%, respectively. These results indicate that these strains represent a novel species of <i>Dolosigranulum</i>, for which we propose the name <i>Dolosigranulum savutiense</i> sp. nov., with the type strain MSK294<sup>T</sup> (=DSM 117171<sup>T</sup>=JCM 36673<sup>T</sup>).

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Journal
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
Published
2024-08-21
DOI
https://doi.org/10.1099/ijsem.0.006498
Citations
5
Primary Topic
Genomics and Phylogenetic Studies
Type
article
Field-Weighted Citation Impact
1.17

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article

Dolosigranulum savutiense sp. nov., isolated from human upper respiratory samples collected in Botswana

Jhoanna N. Aquino, Sefelani Boiditswe, Andrew P. Steenhoff, Antonio Maldonado‐Barragán et al.
5 citations
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
Genomics and Phylogenetic Studies
1.17
article

Dolosigranulum savutiense sp. nov., isolated from human upper respiratory samples collected in Botswana

Jhoanna N. Aquino, Sefelani Boiditswe, Andrew P. Steenhoff, Antonio Maldonado‐Barragán, Elena B. Popowitch, Jillian H. Hurst, Matthew S. Kelly, Mohamed Z. Patel, Alp Kuzey Sozat, Adrian J. Caiazzo
article en
5 citations

Abstract

Four strains (MSK211, MSK294<sup>T</sup>, MSK312, MSK433) of a novel <i>Dolosigranulum</i> species were cultured from nasopharyngeal swabs collected from mother-infant dyads in southern Botswana. These strains grew optimally on tryptic soy agar with 5% sheep blood solid medium and in fastidious bacteria broth. Colonies on tryptic soy agar with 5% sheep blood agar appeared grey or white with a flat, smooth surface and variable alpha haemolysis. Cells were Gram-positive, non-spore-forming, non-motile cocci that lacked catalase or oxidase activity. Major fatty acids were C<sub>16 : 0</sub> (palmitic acid), C<sub>18 : 1 </sub>ω9<i>c</i> (oleic acid), and C<sub>18 : 0</sub> (stearic acid). Analyses of 16S rRNA gene sequences identified these strains as belonging to the genus <i>Dolosigranulum</i> (family <i>Carnobacteriaceae</i>), which currently contains only a single validly published species (<i>Dolosigranulum pigrum</i>). Whole-genome sequencing revealed that the genomes of these strains are 1.98-2.07 Mbp in size and have a G+C content of 39.6-39.9 mol%. Comparisons of these genomes to publicly available genomes of <i>D. pigrum</i> yielded average nucleotide identities and <i>in silico</i> DNA-DNA hybridization values of 92.3-92.9% and 49.1-51.4%, respectively. These results indicate that these strains represent a novel species of <i>Dolosigranulum</i>, for which we propose the name <i>Dolosigranulum savutiense</i> sp. nov., with the type strain MSK294<sup>T</sup> (=DSM 117171<sup>T</sup>=JCM 36673<sup>T</sup>).

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGYVol. 74(8)
Children's Hospital of Philadelphia (US), University of Botswana (BW), Duke University (US)
Division of Microbiology and Infectious Diseases, National Institute of Allergy and Infectious Diseases
Life in Land
Openalex Percentile: Top 22%
Genomics and Phylogenetic Studies
1.17
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