A New Route to the Prebiotic Synthesis of Glycine via <i>Ab Initio</i>-Based Machine Learning Calculations

In this work, we study the synthesis of glycine, the simplest amino acid, using <i>ab initio</i> molecular dynamics and enhanced sampling techniques to explore and quantify novel potential pathways. Our protocol integrates state-of-the-art machine learning approaches, allowing us to sample relevant chemical spaces more efficiently. We discover a novel "oxyglycolate path", distinct from the "standard" Strecker mechanism, identify new intermediates, and provide a full thermodynamic characterization of all reaction steps. This alternative pathway aligns better with meteoritic and experimental observations, paving the way for further investigations. Integrating quantum accuracy and machine learning in prebiotic chemistry represents a methodological milestone advancing the exploration of life's prebiotic origins.

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Publication Details

Journal
The Journal of Physical Chemistry Letters
Published
2024-08-19
DOI
https://doi.org/10.1021/acs.jpclett.4c01954
Citations
9
Primary Topic
Origins and Evolution of Life
Type
article
Field-Weighted Citation Impact
2.98
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article

A New Route to the Prebiotic Synthesis of Glycine via Ab Initio-Based Machine Learning Calculations

Timothée Devergne, Léon Huet, Antonino Marco Saitta, Théo Magrino
9 citations
The Journal of Physical Chemistry Letters
Origins and Evolution of Life
2.98
article

A New Route to the Prebiotic Synthesis of Glycine via Ab Initio-Based Machine Learning Calculations

Timothée Devergne, Léon Huet, Antonino Marco Saitta, Théo Magrino
article en
9 citations

Abstract

In this work, we study the synthesis of glycine, the simplest amino acid, using <i>ab initio</i> molecular dynamics and enhanced sampling techniques to explore and quantify novel potential pathways. Our protocol integrates state-of-the-art machine learning approaches, allowing us to sample relevant chemical spaces more efficiently. We discover a novel "oxyglycolate path", distinct from the "standard" Strecker mechanism, identify new intermediates, and provide a full thermodynamic characterization of all reaction steps. This alternative pathway aligns better with meteoritic and experimental observations, paving the way for further investigations. Integrating quantum accuracy and machine learning in prebiotic chemistry represents a methodological milestone advancing the exploration of life's prebiotic origins.

The Journal of Physical Chemistry LettersVol. 15(34)
Centre National de la Recherche Scientifique (FR), Italian Institute of Technology (IT), Sorbonne Université (FR), Institut de minéralogie, de physique des matériaux et de cosmochimie (FR)
Zero hunger
Openalex Percentile: Top 9%
Origins and Evolution of Life
2.98
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