Datasets of fungal diversity and pseudo-chromosomal genomes of mangrove rhizosphere soil in China

With climate change and anthropic influence on the coastal ecosystems, mangrove ecosystems are disappearing at an alarming rate. Accordingly, it becomes important to track, study, record and store the mangrove microbial community considering their ecological importance and potential for biotechnological applications. Here, we provide information on mangrove fungal community composition and diversity in mangrove ecosystems with different plant species and from various locations differing in relation to anthropic influences. We describe twelve newly assembled genomes, including four chromosomal-level genomes of fungal isolates from the mangrove ecosystems coupled with functional annotations. We envisage that these data will be of value for future studies including comparative genome analysis and large-scale temporal and/or spatial research to elucidate the potential mechanisms by which mangrove fungal communities assemble and evolve. We further anticipate that the genomes represent valuable resources for bioprospecting related to industrial or clinical uses.

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Publication Details

Journal
Scientific Data
Published
2024-08-20
DOI
https://doi.org/10.1038/s41597-024-03748-5
Citations
1
Primary Topic
Microbial Community Ecology and Physiology
Type
article
Field-Weighted Citation Impact
0.46

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article

Datasets of fungal diversity and pseudo-chromosomal genomes of mangrove rhizosphere soil in China

Chengcheng Shi, Karsten Kristiansen, Yangyang Jia, Ling Jiang et al.
1 citations
Scientific Data
Microbial Community Ecology and Physiology
0.46
article

Datasets of fungal diversity and pseudo-chromosomal genomes of mangrove rhizosphere soil in China

Chengcheng Shi, Karsten Kristiansen, Yangyang Jia, Ling Jiang, Guangyi Fan, Wenjie Guo, Liangwei Li, Qijin Ge, Changhao Zhou, Ling Peng, Jianwei Chen, Zhidong Zhang, Wenwei Zhang, Tianci Guo
article en
1 citations

Abstract

With climate change and anthropic influence on the coastal ecosystems, mangrove ecosystems are disappearing at an alarming rate. Accordingly, it becomes important to track, study, record and store the mangrove microbial community considering their ecological importance and potential for biotechnological applications. Here, we provide information on mangrove fungal community composition and diversity in mangrove ecosystems with different plant species and from various locations differing in relation to anthropic influences. We describe twelve newly assembled genomes, including four chromosomal-level genomes of fungal isolates from the mangrove ecosystems coupled with functional annotations. We envisage that these data will be of value for future studies including comparative genome analysis and large-scale temporal and/or spatial research to elucidate the potential mechanisms by which mangrove fungal communities assemble and evolve. We further anticipate that the genomes represent valuable resources for bioprospecting related to industrial or clinical uses.

Scientific DataVol. 11(1)
BGI Group (China) (CN), University of Copenhagen (DK), Nanjing Tech University (CN), Xinjiang Academy of Agricultural Sciences (CN), Qingdao Institute of Marine Geology (CN), China National GeneBank (CN), BGI Research (CN)
National Natural Science Foundation of China
Life in Land
Openalex Percentile: Top 30%
Microbial Community Ecology and Physiology
0.46
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