Genetic Code Expansion in <i>Shewanella oneidensis</i> MR-1 Allows Site-Specific Incorporation of Bioorthogonal Functional Groups into a <i>c</i>-Type Cytochrome

Genetic code expansion has enabled cellular synthesis of proteins containing unique chemical functional groups to allow the understanding and modulation of biological systems and engineer new biotechnology. Here, we report the development of efficient methods for site-specific incorporation of structurally diverse noncanonical amino acids (ncAAs) into proteins expressed in the electroactive bacterium <i>Shewanella oneidensis</i> MR-1. We demonstrate that the biosynthetic machinery for ncAA incorporation is compatible and orthogonal to the endogenous pathways of <i>S. oneidensis</i> MR-1 for protein synthesis, maturation of <i>c</i>-type cytochromes, and protein secretion. This allowed the efficient synthesis of a <i>c</i>-type cytochrome, MtrC, containing site-specifically incorporated ncAA in <i>S. oneidensis</i> MR-1 cells. We demonstrate that site-specific replacement of surface residues in MtrC with ncAAs does not influence its three-dimensional structure and redox properties. We also demonstrate that site-specifically incorporated bioorthogonal functional groups could be used for efficient site-selective labeling of MtrC with fluorophores. These synthetic biology developments pave the way to expand the chemical repertoire of designer proteins expressed in <i>S. oneidensis</i> MR-1.

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Publication Details

Journal
ACS Synthetic Biology
Published
2024-08-19
DOI
https://doi.org/10.1021/acssynbio.4c00248
Citations
4
Primary Topic
Microbial Fuel Cells and Bioremediation
Type
article
Field-Weighted Citation Impact
0.82

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article

Genetic Code Expansion in Shewanella oneidensis MR-1 Allows Site-Specific Incorporation of Bioorthogonal Functional Groups into a c-Type Cytochrome

Thomas A. Clarke, Colin W. J. Lockwood, Simone Newton‐Payne, Alexander L. Sutton-Cook et al.
4 citations
ACS Synthetic Biology
Microbial Fuel Cells and Bioremediation
0.82
article

Genetic Code Expansion in Shewanella oneidensis MR-1 Allows Site-Specific Incorporation of Bioorthogonal Functional Groups into a c-Type Cytochrome

Thomas A. Clarke, Colin W. J. Lockwood, Simone Newton‐Payne, Alexander L. Sutton-Cook, Benjamin W. Nash, Jessica H. van Wonderen, Amit Sachdeva, Marcus J. Edwards, Julea N. Butt, Advait R. Aithal, Archie Crook, Abigail Connolly, Keir P. S. Whiting
article en
4 citations

Abstract

Genetic code expansion has enabled cellular synthesis of proteins containing unique chemical functional groups to allow the understanding and modulation of biological systems and engineer new biotechnology. Here, we report the development of efficient methods for site-specific incorporation of structurally diverse noncanonical amino acids (ncAAs) into proteins expressed in the electroactive bacterium <i>Shewanella oneidensis</i> MR-1. We demonstrate that the biosynthetic machinery for ncAA incorporation is compatible and orthogonal to the endogenous pathways of <i>S. oneidensis</i> MR-1 for protein synthesis, maturation of <i>c</i>-type cytochromes, and protein secretion. This allowed the efficient synthesis of a <i>c</i>-type cytochrome, MtrC, containing site-specifically incorporated ncAA in <i>S. oneidensis</i> MR-1 cells. We demonstrate that site-specific replacement of surface residues in MtrC with ncAAs does not influence its three-dimensional structure and redox properties. We also demonstrate that site-specifically incorporated bioorthogonal functional groups could be used for efficient site-selective labeling of MtrC with fluorophores. These synthetic biology developments pave the way to expand the chemical repertoire of designer proteins expressed in <i>S. oneidensis</i> MR-1.

ACS Synthetic BiologyVol. 13(9)
University of Essex (GB), University of East Anglia (GB)
Diamond Light Source, UK Research and Innovation, Leverhulme Trust, University of East Anglia, Directorate for Biological Sciences, Biotechnology and Biological Sciences Research Council
Zero hunger
Openalex Percentile: Top 31%
Microbial Fuel Cells and Bioremediation
0.82
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