Trans2express – de novo transcriptome assembly pipeline optimized for gene expression analysis
We present Trans2express - a protocol for de novo hybrid transcriptome assembly aimed at recovering of a single transcript per gene. We expect this protocol to promote the characterization of transcriptomes and gene expression analysis in non-model plants and web-based tool to be of use to a wide range of plant biologists.
Authors
- Artem S. Kasianov (ORCID: https://orcid.org/0000-0001-8086-392X)
- Maria D. Logacheva (ORCID: https://orcid.org/0000-0002-8940-0400)
- Mikhail I. Schelkunov (ORCID: https://orcid.org/0000-0001-8804-7281)
- Anna V. Klepikova (ORCID: https://orcid.org/0000-0001-6459-2170)
- Aleksey A. Penin (ORCID: https://orcid.org/0000-0002-9057-3974)
- Aleksandra M. Kasianova
Institutions
- Skolkovo Institute of Science and Technology (RU)
- Institute for Information Transmission Problems (RU)
Publication Details
- Journal
- Plant Methods
- Published
- 2024-08-16
- DOI
- https://doi.org/10.1186/s13007-024-01255-7
- Citations
- 3
- Primary Topic
- Genomics and Phylogenetic Studies
- Type
- article
- Field-Weighted Citation Impact
- 0.70
Funders
- Ministry of Science and Higher Education of the Russian Federation