Metagenome sequencing and 107 microbial genomes from seamount sediments along the Yap and Mariana trenches

Microbes in the sediments across a series of seamounts along the island arc of the Yap and Mariana trenches were investigated by metagenome. In this study, we reconstructed 107 metagenome-assembled genomes (MAGs), including 100 bacteria and 7 archaea. All the MAGs exhibited >75% completeness and <10% contamination, with 26 MAGs being classified as 'nearly complete' (completeness >90%), while 50 falling within 80-90% range and 31 between 75-80% complete. Phylogenomic analysis revealed that 86% (n = 92) of these MAGs represented new taxa at different taxonomical levels. The species composition of these MAGs was most consistent with the previous reports, with the most abundant phyla being Proteobacteria (n = 39), Methylomirabilota (n = 27), and Nitrospirota (n = 7). These draft genomes provided novel data on species diversity and function in the seamount microbial community, which will provide reference data for extensive comparative genomic studies across crucial phylogenetic groups worldwide.

Authors

Institutions

Publication Details

Journal
Scientific Data
Published
2024-08-15
DOI
https://doi.org/10.1038/s41597-024-03762-7
Citations
3
Primary Topic
Microbial Community Ecology and Physiology
Type
article
Field-Weighted Citation Impact
1.38

Funders

Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

Metagenome sequencing and 107 microbial genomes from seamount sediments along the Yap and Mariana trenches

Yue Zhang, Hongmei Jing
3 citations
Scientific Data
Microbial Community Ecology and Physiology
1.38
article

Metagenome sequencing and 107 microbial genomes from seamount sediments along the Yap and Mariana trenches

Yue Zhang, Hongmei Jing
article en
3 citations

Abstract

Microbes in the sediments across a series of seamounts along the island arc of the Yap and Mariana trenches were investigated by metagenome. In this study, we reconstructed 107 metagenome-assembled genomes (MAGs), including 100 bacteria and 7 archaea. All the MAGs exhibited >75% completeness and <10% contamination, with 26 MAGs being classified as 'nearly complete' (completeness >90%), while 50 falling within 80-90% range and 31 between 75-80% complete. Phylogenomic analysis revealed that 86% (n = 92) of these MAGs represented new taxa at different taxonomical levels. The species composition of these MAGs was most consistent with the previous reports, with the most abundant phyla being Proteobacteria (n = 39), Methylomirabilota (n = 27), and Nitrospirota (n = 7). These draft genomes provided novel data on species diversity and function in the seamount microbial community, which will provide reference data for extensive comparative genomic studies across crucial phylogenetic groups worldwide.

Scientific DataVol. 11(1)
Chinese Academy of Sciences (CN), Institute of Deep-Sea Science and Engineering (CN)
Chinese Academy of Sciences
Life below water
Openalex Percentile: Top 18%
Microbial Community Ecology and Physiology
1.38
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.