Joint Extraction of Biomedical Events Based on Dynamic Path Planning Strategy and Hybrid Neural Network

Biomedical event detection is a pivotal information extraction task in molecular biology and biomedical research, which provides inspiration for the medical search, disease prevention, and new drug development. The existing methods usually detect simple biomedical events and complex events with the same model, and the performance of the complex biomedical event extraction is relatively low. In this paper, we build different neural networks for simple and complex events respectively, which helps to promote the performance of complex event extraction. To avoid redundant information, we design dynamic path planning strategy for argument detection. To take full use of the information between the trigger identification and argument detection subtasks, and reduce the cascading errors, we build a joint event extraction model. Experimental results demonstrate our approach achieves the best F-score on the biomedical benchmark MLEE dataset and outperforms the recent state-of-the-art methods.

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Publication Details

Journal
IEEE/ACM Transactions on Computational Biology and Bioinformatics
Published
2024-08-13
DOI
https://doi.org/10.1109/tcbb.2024.3442199
Primary Topic
Robotic Path Planning Algorithms
Type
article
Field-Weighted Citation Impact
0.00
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article

Joint Extraction of Biomedical Events Based on Dynamic Path Planning Strategy and Hybrid Neural Network

Xinyu He, Shixin Li, Bo Yu, Yonggong Ren et al.
IEEE/ACM Transactions on Computational Biology and Bioinformatics
Robotic Path Planning Algorithms
article

Joint Extraction of Biomedical Events Based on Dynamic Path Planning Strategy and Hybrid Neural Network

Xinyu He, Shixin Li, Bo Yu, Yonggong Ren, Yujie Tang
article en

Abstract

Biomedical event detection is a pivotal information extraction task in molecular biology and biomedical research, which provides inspiration for the medical search, disease prevention, and new drug development. The existing methods usually detect simple biomedical events and complex events with the same model, and the performance of the complex biomedical event extraction is relatively low. In this paper, we build different neural networks for simple and complex events respectively, which helps to promote the performance of complex event extraction. To avoid redundant information, we design dynamic path planning strategy for argument detection. To take full use of the information between the trigger identification and argument detection subtasks, and reduce the cascading errors, we build a joint event extraction model. Experimental results demonstrate our approach achieves the best F-score on the biomedical benchmark MLEE dataset and outperforms the recent state-of-the-art methods.

IEEE/ACM Transactions on Computational Biology and BioinformaticsVol. 21(6)
Liaoning Normal University (CN)
Openalex Percentile: Top 88%
Robotic Path Planning Algorithms
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Joint Extraction of Biomedical Events Based on Dynamic Path Planning Strategy and Hybrid Neural Network — Xinyu He, Shixin Li, et al. · IEEE/ACM Transactions on Computational Biology and Bioinformatics (2024) | TGRS Research Map | TGRS