<i>Leptothrix ochracea</i> genomes reveal potential for mixotrophic growth on Fe(II) and organic carbon
Winogradsky's observations of <i>L. ochracea</i> led him to propose autotrophic iron oxidation as a new microbial metabolism, following his work on autotrophic sulfur-oxidizers. While much culture-based research has ensued, isolation proved elusive, so most work on <i>L. ochracea</i> has been based in the environment and in microcosms. Meanwhile, the autotrophic <i>Gallionella</i> became the model for freshwater microbial iron oxidation, while heterotrophic and mixotrophic iron oxidation is not well-studied. Ecological studies have shown that <i>Leptothrix</i> overtakes <i>Gallionella</i> when dissolved organic carbon content increases, demonstrating distinct niches. This study presents the first near-complete genomes of <i>L. ochracea</i>, which share some features with autotrophic iron oxidizers, while also incorporating heterotrophic metabolisms. These genome, metabolic modeling, and transcriptome results give us a detailed metabolic picture of how the organism may combine lithoautotrophy with organoheterotrophy to promote Fe oxidation and C cycling and drive many biogeochemical processes resulting from microbial growth and iron oxyhydroxide formation in wetlands.
Authors
- Rene L. Hoover (ORCID: https://orcid.org/0000-0002-8464-4553)
- Daniel I. Kaplan (ORCID: https://orcid.org/0000-0002-1019-8386)
- Clara S. Chan (ORCID: https://orcid.org/0000-0003-1810-4994)
- Pamela Weisenhorn (ORCID: https://orcid.org/0000-0003-1844-5502)
- Ibrahim Farag (ORCID: https://orcid.org/0000-0002-5732-4108)
- David Emerson (ORCID: https://orcid.org/0000-0003-1737-356X)
- Gracee K. Tothero (ORCID: https://orcid.org/0000-0001-7792-3880)
Institutions
- Argonne National Laboratory (US)
- Biotechnology Institute (US)
- University of Georgia (US)
- Savannah River National Laboratory (US)
- Bigelow Laboratory for Ocean Sciences (US)
- University of Delaware (US)
Publication Details
- Journal
- Applied and Environmental Microbiology
- Published
- 2024-08-12
- DOI
- https://doi.org/10.1128/aem.00599-24
- Citations
- 16
- Primary Topic
- Microbial Community Ecology and Physiology
- Type
- article
- Field-Weighted Citation Impact
- 7.80
Funders
- National Science Foundation
- U.S. Department of Energy
- Delaware IDeA Network of Biomedical Research Excellence
- Joint Genome Institute
- National Institutes of Health