<i>Leptothrix ochracea</i> genomes reveal potential for mixotrophic growth on Fe(II) and organic carbon

Winogradsky's observations of <i>L. ochracea</i> led him to propose autotrophic iron oxidation as a new microbial metabolism, following his work on autotrophic sulfur-oxidizers. While much culture-based research has ensued, isolation proved elusive, so most work on <i>L. ochracea</i> has been based in the environment and in microcosms. Meanwhile, the autotrophic <i>Gallionella</i> became the model for freshwater microbial iron oxidation, while heterotrophic and mixotrophic iron oxidation is not well-studied. Ecological studies have shown that <i>Leptothrix</i> overtakes <i>Gallionella</i> when dissolved organic carbon content increases, demonstrating distinct niches. This study presents the first near-complete genomes of <i>L. ochracea</i>, which share some features with autotrophic iron oxidizers, while also incorporating heterotrophic metabolisms. These genome, metabolic modeling, and transcriptome results give us a detailed metabolic picture of how the organism may combine lithoautotrophy with organoheterotrophy to promote Fe oxidation and C cycling and drive many biogeochemical processes resulting from microbial growth and iron oxyhydroxide formation in wetlands.

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Publication Details

Journal
Applied and Environmental Microbiology
Published
2024-08-12
DOI
https://doi.org/10.1128/aem.00599-24
Citations
16
Primary Topic
Microbial Community Ecology and Physiology
Type
article
Field-Weighted Citation Impact
7.80

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article

Leptothrix ochracea genomes reveal potential for mixotrophic growth on Fe(II) and organic carbon

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16 citations
Applied and Environmental Microbiology
Microbial Community Ecology and Physiology
7.80
article

Leptothrix ochracea genomes reveal potential for mixotrophic growth on Fe(II) and organic carbon

Rene L. Hoover, Daniel I. Kaplan, Clara S. Chan, Pamela Weisenhorn, Ibrahim Farag, David Emerson, Gracee K. Tothero
article en
16 citations

Abstract

Winogradsky's observations of <i>L. ochracea</i> led him to propose autotrophic iron oxidation as a new microbial metabolism, following his work on autotrophic sulfur-oxidizers. While much culture-based research has ensued, isolation proved elusive, so most work on <i>L. ochracea</i> has been based in the environment and in microcosms. Meanwhile, the autotrophic <i>Gallionella</i> became the model for freshwater microbial iron oxidation, while heterotrophic and mixotrophic iron oxidation is not well-studied. Ecological studies have shown that <i>Leptothrix</i> overtakes <i>Gallionella</i> when dissolved organic carbon content increases, demonstrating distinct niches. This study presents the first near-complete genomes of <i>L. ochracea</i>, which share some features with autotrophic iron oxidizers, while also incorporating heterotrophic metabolisms. These genome, metabolic modeling, and transcriptome results give us a detailed metabolic picture of how the organism may combine lithoautotrophy with organoheterotrophy to promote Fe oxidation and C cycling and drive many biogeochemical processes resulting from microbial growth and iron oxyhydroxide formation in wetlands.

Applied and Environmental MicrobiologyVol. 90(9)
Argonne National Laboratory (US), Biotechnology Institute (US), University of Georgia (US), Savannah River National Laboratory (US), Bigelow Laboratory for Ocean Sciences (US), University of Delaware (US)
National Science Foundation, U.S. Department of Energy, Delaware IDeA Network of Biomedical Research Excellence, Joint Genome Institute, National Institutes of Health
Openalex Percentile: Top 2%
Microbial Community Ecology and Physiology
7.80
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