Puckering effects of 4-hydroxy-<scp>L</scp>-proline isomers on the conformation of ornithine-free Gramicidin S

The cyclic peptide <i>cyclo</i>(Val-Leu-Leu-d-Phe-Pro)<sub>2</sub> (peptide <b>1</b>) was specifically designed for structural chemistry investigations, drawing inspiration from Gramicidin S (GS). Previous studies have shown that Pro residues within <b>1</b> adopt a down-puckering conformation of the pyrrolidine ring. By incorporating fluoride-Pro with 4-<i>trans</i>/<i>cis</i>-isomers into <b>1</b>, an up-puckering conformation was successfully induced. In the current investigation, introducing hy-droxy-prolines with 4-<i>trans</i>/<i>cis</i>-isomer configurations (tHyp/cHyp) into <b>1</b> gave <i>cyclo</i>(Val-Leu-Leu-d-Phe-tHyp)<sub>2</sub> methanol disolvate monohydrate, C<sub>62</sub>H<sub>94</sub>N<sub>10</sub>O<sub>12</sub>·2CH<sub>4</sub>O·H<sub>2</sub>O (<b>4</b>), and <i>cyclo</i>(Val-Leu-Leu-d-Phe-cHyp)<sub>2</sub> monohydrate, C<sub>62</sub>H<sub>94</sub>N<sub>10</sub>O<sub>12</sub>·H<sub>2</sub>O (<b>5</b>), respectively. However, the puckering of <b>4</b> and <b>5</b> remained in the down conformation, regardless of the geometric position of the hydroxyl group. Although the backbone structure of <b>4</b> with <i>trans</i>-substitution was asymmetric, the asymmetric backbone of <b>5</b> with <i>cis</i>-substitution was unexpected. It is speculated that the anti-cipated influence of stress from the geometric positioning, which was expected to affect the puckering, may have been mitigated by inter-actions between the hydroxyl groups of hy-droxy-proline, the solvent mol-ecules, and peptides.

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Journal
Acta Crystallographica Section E Crystallographic Communications
Published
2024-08-09
DOI
https://doi.org/10.1107/s2056989024007771
Primary Topic
Chemical Synthesis and Analysis
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article
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article

Puckering effects of 4-hydroxy-L-proline isomers on the conformation of ornithine-free Gramicidin S

Takuma Kato, Mitsunobu Doi, Akiko Asano, Kanako Nakayama et al.
Acta Crystallographica Section E Crystallographic Communications
Chemical Synthesis and Analysis
article

Puckering effects of 4-hydroxy-L-proline isomers on the conformation of ornithine-free Gramicidin S

Takuma Kato, Mitsunobu Doi, Akiko Asano, Kanako Nakayama, Sakura Okada
article en

Abstract

The cyclic peptide <i>cyclo</i>(Val-Leu-Leu-d-Phe-Pro)<sub>2</sub> (peptide <b>1</b>) was specifically designed for structural chemistry investigations, drawing inspiration from Gramicidin S (GS). Previous studies have shown that Pro residues within <b>1</b> adopt a down-puckering conformation of the pyrrolidine ring. By incorporating fluoride-Pro with 4-<i>trans</i>/<i>cis</i>-isomers into <b>1</b>, an up-puckering conformation was successfully induced. In the current investigation, introducing hy-droxy-prolines with 4-<i>trans</i>/<i>cis</i>-isomer configurations (tHyp/cHyp) into <b>1</b> gave <i>cyclo</i>(Val-Leu-Leu-d-Phe-tHyp)<sub>2</sub> methanol disolvate monohydrate, C<sub>62</sub>H<sub>94</sub>N<sub>10</sub>O<sub>12</sub>·2CH<sub>4</sub>O·H<sub>2</sub>O (<b>4</b>), and <i>cyclo</i>(Val-Leu-Leu-d-Phe-cHyp)<sub>2</sub> monohydrate, C<sub>62</sub>H<sub>94</sub>N<sub>10</sub>O<sub>12</sub>·H<sub>2</sub>O (<b>5</b>), respectively. However, the puckering of <b>4</b> and <b>5</b> remained in the down conformation, regardless of the geometric position of the hydroxyl group. Although the backbone structure of <b>4</b> with <i>trans</i>-substitution was asymmetric, the asymmetric backbone of <b>5</b> with <i>cis</i>-substitution was unexpected. It is speculated that the anti-cipated influence of stress from the geometric positioning, which was expected to affect the puckering, may have been mitigated by inter-actions between the hydroxyl groups of hy-droxy-proline, the solvent mol-ecules, and peptides.

Acta Crystallographica Section E Crystallographic CommunicationsVol. 80(9)
Osaka University of Pharmaceutical Sciences (JP)
Clean water and sanitation
Openalex Percentile: Top 88%
Chemical Synthesis and Analysis
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