Benchmarking clustering, alignment, and integration methods for spatial transcriptomics
Our analyses lead to comprehensive recommendations that cover multiple aspects, helping users to select optimal tools for their specific needs and guide future method development.
Authors
- Xin Zhou (ORCID: https://orcid.org/0000-0003-4015-4787)
- Yunfei Hu (ORCID: https://orcid.org/0000-0002-0156-2326)
- Can Luo (ORCID: https://orcid.org/0000-0002-7311-5963)
- Yikang Li (ORCID: https://orcid.org/0009-0008-6967-7382)
- M. Subba Rao (ORCID: https://orcid.org/0009-0006-6582-4598)
- Haoran Qin (ORCID: https://orcid.org/0009-0008-4784-0943)
- Wenjun Shen (ORCID: https://orcid.org/0000-0001-5744-505X)
- Manfei Xie
- Jihoon Baek
Institutions
- Vanderbilt University (US)
- Shantou University (CN)
- Shantou University Medical College (CN)
Publication Details
- Journal
- Genome biology
- Published
- 2024-08-09
- DOI
- https://doi.org/10.1186/s13059-024-03361-0
- Citations
- 78
- Primary Topic
- Single-cell and spatial transcriptomics
- Type
- article
- Field-Weighted Citation Impact
- 18.24
Funders
- National Institute of General Medical Sciences