Microbacterium humicola sp. nov., Microbacterium terrisoli sp. nov., Paenibacillus pedocola sp. nov., Paenibacillus silviterrae sp. nov., Flavobacterium terrisoli sp. nov., and Aquabacterium humicola sp. nov., isolated from soil

Four Gram-stain-positive and two Gram-stain-negative bacterial strains, designated as W4<sup>T</sup>, FW7<sup>T</sup>, TW48<sup>T</sup>, UW52<sup>T</sup>, PT-3<sup>T</sup>, and RJY3<sup>T</sup>, were isolated from soil samples collected from the Republic of Korea. The 16S rRNA gene sequence analysis showed that strains W4<sup>T</sup> and FW7<sup>T</sup> belonged to the genus <i>Microbacterium</i>, strains TW48<sup>T</sup> and UW52<sup>T</sup> were affiliated to the genus <i>Paenibacillus,</i> strain PT-3<sup>T</sup> was related to the genus <i>Flavobacterium</i>, and strain RJY3<sup>T</sup> was associated with the genus <i>Aquabacterium</i>. The closest phylogenetic taxa to W4<sup>T</sup>, FW7<sup>T</sup>, TW48<sup>T</sup>, UW52<sup>T</sup>, PT-3<sup>T</sup>, and RJY3<sup>T</sup> were <i>Microbacterium bovistercoris</i> NEAU-LLE<sup>T</sup> (97.7 %), <i>Microbacterium protaetiae</i> DFW100M-13<sup>T</sup> (97.9 %), <i>Paenibacillus auburnensis</i> JJ-7<sup>T</sup> (99.6 %), <i>Paenibacillus allorhizosphaerae</i> JJ-447<sup>T</sup> (95.7 %), <i>Flavobacterium buctense</i> T7<sup>T</sup> (97.1 %), and <i>Aquabacterium terrae</i> S2<sup>T</sup> (99.5 %), respectively. Average nucleotide identity and digital DNA-DNA hybridization values between the novel strains and related reference type strains were <95.0 % and <70.0 %, respectively. The major cellular fatty acid in strains W4<sup>T</sup>, FW7<sup>T</sup> TW48<sup>T</sup>, and UW52<sup>T</sup> was antiso-C<sub>15 : 0</sub>. Similarly, strain PT-3<sup>T</sup> revealed iso-C<sub>15 : 0</sub>, iso-C<sub>15 : 1</sub> G, iso-C<sub>17 : 0</sub> 3-OH, and iso-C<sub>15 : 0</sub> 3-OH as its principal fatty acids. On the other hand, RJY3<sup>T</sup> exhibited summed feature 3 (C<sub>16 : 1</sub> <i> ω</i>7<i>c</i> and/or C<sub>16 : 1</sub> <i> ω</i>6<i>c</i>), C<sub>16 : 0</sub>, summed feature 8 (C<sub>18 : 1</sub> <i> ω</i>7<i>c</i> and/or C<sub>18 : 1</sub> <i> ω</i>6<i>c</i>), and C<sub>12 : 0</sub> as its predominant fatty acids. Overall, the polyphasic taxonomic data indicated that strains W4<sup>T</sup>, FW7<sup>T</sup>, TW48<sup>T</sup>, UW52<sup>T</sup>, PT-3<sup>T</sup>, and RJY3<sup>T</sup> represent novel species within the genera <i>Microbacterium</i>, <i>Paenibacillus</i>, <i>Flavobacterium</i>, and <i>Aquabacterium</i>. Accordingly, we propose the names <i>Microbacterium humicola</i> sp. nov., with the type strain W4<sup>T</sup> (=KCTC 49888<sup>T</sup>=NBRC 116001<sup>T</sup>), <i>Microbacterium terrisoli</i> sp. nov., with the type strain FW7<sup>T</sup> (=KCTC 49859<sup>T</sup>=NBRC 116000<sup>T</sup>), <i>Paenibacillus pedocola</i> sp. nov., with the type strain TW48<sup>T</sup> (=KCTC 43470<sup>T</sup>=NBRC 116017<sup>T</sup>), <i>Paenibacillus silviterrae</i> sp. nov., with the type strain UW52<sup>T</sup> (=KCTC 43477<sup>T</sup>=NBRC 116018<sup>T</sup>), <i>Flavobacterium terrisoli</i> sp. nov., with the type strain PT-3<sup>T</sup> (=KCTC 92106<sup>T</sup>=NBRC 116012<sup>T</sup>), and <i>Aquabacterium humicola</i> sp. nov., with the type strain RJY3<sup>T</sup> (=KCTC 92105<sup>T</sup>=NBRC 115831<sup>T</sup>).

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INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
Published
2024-08-09
DOI
https://doi.org/10.1099/ijsem.0.006486
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2
Primary Topic
Genomics and Phylogenetic Studies
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Microbacterium humicola sp. nov., Microbacterium terrisoli sp. nov., Paenibacillus pedocola sp. nov., Paenibacillus silviterrae sp. nov., Flavobacterium terrisoli sp. nov., and Aquabacterium humicola sp. nov., isolated from soil

Hyosun Lee, Ki‐Eun Lee, Won‐Jae Chi, Dhiraj Kumar Chaudhary et al.
2 citations
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
Genomics and Phylogenetic Studies
0.47
article

Microbacterium humicola sp. nov., Microbacterium terrisoli sp. nov., Paenibacillus pedocola sp. nov., Paenibacillus silviterrae sp. nov., Flavobacterium terrisoli sp. nov., and Aquabacterium humicola sp. nov., isolated from soil

Hyosun Lee, Ki‐Eun Lee, Won‐Jae Chi, Dhiraj Kumar Chaudhary, In‐Tae Cha, Dong-Uk Kim
article en
2 citations

Abstract

Four Gram-stain-positive and two Gram-stain-negative bacterial strains, designated as W4<sup>T</sup>, FW7<sup>T</sup>, TW48<sup>T</sup>, UW52<sup>T</sup>, PT-3<sup>T</sup>, and RJY3<sup>T</sup>, were isolated from soil samples collected from the Republic of Korea. The 16S rRNA gene sequence analysis showed that strains W4<sup>T</sup> and FW7<sup>T</sup> belonged to the genus <i>Microbacterium</i>, strains TW48<sup>T</sup> and UW52<sup>T</sup> were affiliated to the genus <i>Paenibacillus,</i> strain PT-3<sup>T</sup> was related to the genus <i>Flavobacterium</i>, and strain RJY3<sup>T</sup> was associated with the genus <i>Aquabacterium</i>. The closest phylogenetic taxa to W4<sup>T</sup>, FW7<sup>T</sup>, TW48<sup>T</sup>, UW52<sup>T</sup>, PT-3<sup>T</sup>, and RJY3<sup>T</sup> were <i>Microbacterium bovistercoris</i> NEAU-LLE<sup>T</sup> (97.7 %), <i>Microbacterium protaetiae</i> DFW100M-13<sup>T</sup> (97.9 %), <i>Paenibacillus auburnensis</i> JJ-7<sup>T</sup> (99.6 %), <i>Paenibacillus allorhizosphaerae</i> JJ-447<sup>T</sup> (95.7 %), <i>Flavobacterium buctense</i> T7<sup>T</sup> (97.1 %), and <i>Aquabacterium terrae</i> S2<sup>T</sup> (99.5 %), respectively. Average nucleotide identity and digital DNA-DNA hybridization values between the novel strains and related reference type strains were <95.0 % and <70.0 %, respectively. The major cellular fatty acid in strains W4<sup>T</sup>, FW7<sup>T</sup> TW48<sup>T</sup>, and UW52<sup>T</sup> was antiso-C<sub>15 : 0</sub>. Similarly, strain PT-3<sup>T</sup> revealed iso-C<sub>15 : 0</sub>, iso-C<sub>15 : 1</sub> G, iso-C<sub>17 : 0</sub> 3-OH, and iso-C<sub>15 : 0</sub> 3-OH as its principal fatty acids. On the other hand, RJY3<sup>T</sup> exhibited summed feature 3 (C<sub>16 : 1</sub> <i> ω</i>7<i>c</i> and/or C<sub>16 : 1</sub> <i> ω</i>6<i>c</i>), C<sub>16 : 0</sub>, summed feature 8 (C<sub>18 : 1</sub> <i> ω</i>7<i>c</i> and/or C<sub>18 : 1</sub> <i> ω</i>6<i>c</i>), and C<sub>12 : 0</sub> as its predominant fatty acids. Overall, the polyphasic taxonomic data indicated that strains W4<sup>T</sup>, FW7<sup>T</sup>, TW48<sup>T</sup>, UW52<sup>T</sup>, PT-3<sup>T</sup>, and RJY3<sup>T</sup> represent novel species within the genera <i>Microbacterium</i>, <i>Paenibacillus</i>, <i>Flavobacterium</i>, and <i>Aquabacterium</i>. Accordingly, we propose the names <i>Microbacterium humicola</i> sp. nov., with the type strain W4<sup>T</sup> (=KCTC 49888<sup>T</sup>=NBRC 116001<sup>T</sup>), <i>Microbacterium terrisoli</i> sp. nov., with the type strain FW7<sup>T</sup> (=KCTC 49859<sup>T</sup>=NBRC 116000<sup>T</sup>), <i>Paenibacillus pedocola</i> sp. nov., with the type strain TW48<sup>T</sup> (=KCTC 43470<sup>T</sup>=NBRC 116017<sup>T</sup>), <i>Paenibacillus silviterrae</i> sp. nov., with the type strain UW52<sup>T</sup> (=KCTC 43477<sup>T</sup>=NBRC 116018<sup>T</sup>), <i>Flavobacterium terrisoli</i> sp. nov., with the type strain PT-3<sup>T</sup> (=KCTC 92106<sup>T</sup>=NBRC 116012<sup>T</sup>), and <i>Aquabacterium humicola</i> sp. nov., with the type strain RJY3<sup>T</sup> (=KCTC 92105<sup>T</sup>=NBRC 115831<sup>T</sup>).

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGYVol. 74(8)
National Institute of Biological Resources (KR), Pukyong National University (KR), Sangji University (KR)
National Institute of Biological Resources
Life in Land
Openalex Percentile: Top 36%
Genomics and Phylogenetic Studies
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