Guanosine hydrogels in focus: A comprehensive analysis through mid-infrared spectroscopy

Guanosine nucleosides and nucleotides have the peculiar ability to self-assemble in water to form supramolecular complex architectures from G-quartets to G-quadruplexes. G-quadruplexes exhibit in turn a large liquid crystalline lyotropic polymorphism, but they eventually cross-link or entangle to form a densely connected 3D network (a molecular hydrogel), able to entrap very large amount of water (up to the 99% v/v). This high water content of the hydrogels enables tunable softness, deformability, self-healing, and quasi-liquid properties, making them ideal candidates for different biotechnological and biomedical applications. In order to fully exploit their possible applications, Attenuated Total Reflection-Fourier Transform InfraRed (ATR-FTIR) spectroscopy was used to unravel the vibrational characteristics of supramolecular guanosine structures. First, the characteristic vibrations of the known quadruplex structure of guanosine 5<sup>'</sup>-monophosphate, potassium salt (GMP/K), were investigated: the identified peaks reflected both the chemical composition of the sample and the formation of quartets, octamers, and quadruplexes. Second, the role of K<sup>+</sup> and Na<sup>+</sup> cations in promoting the quadruplex formation was assessed: infrared spectra confirmed that both cations induce the formation of G-quadruplexes and that GMP/K is more stable in the G-quadruplex organization. Finally, ATR-FTIR spectroscopy was used to investigate binary mixtures of guanosine (Gua) and GMP/K or GMP/Na, both systems forming G-hydrogels. The same G-quadruplex-based structure was found in both mixtures, but the proportion of Gua and GMP affected some features, like sugar puckering, guanine vibrations, and base stacking, reflecting the known side-to-side aggregation and bundle formation occurring in these binary systems.

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Journal
Spectrochimica Acta Part A Molecular and Biomolecular Spectroscopy
Published
2024-08-08
DOI
https://doi.org/10.1016/j.saa.2024.124939
Primary Topic
Photoreceptor and optogenetics research
Type
article
Field-Weighted Citation Impact
0.00

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article

Guanosine hydrogels in focus: A comprehensive analysis through mid-infrared spectroscopy

Alessia Pepe, Francesca Ripanti, Valentina Notarstefano, Paolo Mariani et al.
Spectrochimica Acta Part A Molecular and Biomolecular Spectroscopy
Photoreceptor and optogenetics research
article

Guanosine hydrogels in focus: A comprehensive analysis through mid-infrared spectroscopy

Alessia Pepe, Francesca Ripanti, Valentina Notarstefano, Paolo Mariani, Lisa Vaccari, Federica Piccirilli
article en

Abstract

Guanosine nucleosides and nucleotides have the peculiar ability to self-assemble in water to form supramolecular complex architectures from G-quartets to G-quadruplexes. G-quadruplexes exhibit in turn a large liquid crystalline lyotropic polymorphism, but they eventually cross-link or entangle to form a densely connected 3D network (a molecular hydrogel), able to entrap very large amount of water (up to the 99% v/v). This high water content of the hydrogels enables tunable softness, deformability, self-healing, and quasi-liquid properties, making them ideal candidates for different biotechnological and biomedical applications. In order to fully exploit their possible applications, Attenuated Total Reflection-Fourier Transform InfraRed (ATR-FTIR) spectroscopy was used to unravel the vibrational characteristics of supramolecular guanosine structures. First, the characteristic vibrations of the known quadruplex structure of guanosine 5<sup>'</sup>-monophosphate, potassium salt (GMP/K), were investigated: the identified peaks reflected both the chemical composition of the sample and the formation of quartets, octamers, and quadruplexes. Second, the role of K<sup>+</sup> and Na<sup>+</sup> cations in promoting the quadruplex formation was assessed: infrared spectra confirmed that both cations induce the formation of G-quadruplexes and that GMP/K is more stable in the G-quadruplex organization. Finally, ATR-FTIR spectroscopy was used to investigate binary mixtures of guanosine (Gua) and GMP/K or GMP/Na, both systems forming G-hydrogels. The same G-quadruplex-based structure was found in both mixtures, but the proportion of Gua and GMP affected some features, like sugar puckering, guanine vibrations, and base stacking, reflecting the known side-to-side aggregation and bundle formation occurring in these binary systems.

Spectrochimica Acta Part A Molecular and Biomolecular SpectroscopyVol. 324
Marche Polytechnic University (IT), Elettra-Sincrotrone Trieste S.C.p.A. (IT)
European Commission, European Geosciences Union, Ministero dell’Istruzione, dell’Università e della Ricerca, Naturalis Biodiversity Center, Center for Risk-Based Community Resilience Planning, Taipei Medical University-Shuang Ho Hospital, Ministry of Health and Welfare
Openalex Percentile: Top 88%
Photoreceptor and optogenetics research
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