Accelerated dimensionality reduction of single-cell RNA sequencing data with fastglmpca
The fastglmpca R package is released on CRAN for Windows, macOS and Linux, and the source code is available at github.com/stephenslab/fastglmpca under the open source GPL-3 license. Scripts to reproduce the results in this paper are also available in the GitHub repository and on Zenodo.
Authors
- Matthew Stephens (ORCID: https://orcid.org/0000-0001-5397-9257)
- Peter Carbonetto (ORCID: https://orcid.org/0000-0003-1144-6780)
- Eric Weine (ORCID: https://orcid.org/0009-0001-7809-1649)
Institutions
- University of Chicago (US)
- Dana-Farber Cancer Institute (US)
- Decision Systems (United States) (US)
- Massachusetts Institute of Technology (US)
Publication Details
- Journal
- Bioinformatics
- Published
- 2024-08-01
- DOI
- https://doi.org/10.1093/bioinformatics/btae494
- Citations
- 2
- Primary Topic
- Single-cell and spatial transcriptomics
- Type
- article
- Field-Weighted Citation Impact
- 0.47
Funders
- National Institutes of Health
- National Human Genome Research Institute