Texture‐based speciation of otitis media‐related bacterial biofilms from optical coherence tomography images using supervised classification

Otitis media (OM), a highly prevalent inflammatory middle-ear disease in children worldwide, is commonly caused by an infection, and can lead to antibiotic-resistant bacterial biofilms in recurrent/chronic OM cases. A biofilm related to OM typically contains one or multiple bacterial species. OCT has been used clinically to visualize the presence of bacterial biofilms in the middle ear. This study used OCT to compare microstructural image texture features from bacterial biofilms. The proposed method applied supervised machine-learning-based frameworks (SVM, random forest, and XGBoost) to classify multiple species bacterial biofilms from in vitro cultures and clinically-obtained in vivo images from human subjects. Our findings show that optimized SVM-RBF and XGBoost classifiers achieved more than 95% of AUC, detecting each biofilm class. These results demonstrate the potential for differentiating OM-causing bacterial biofilms through texture analysis of OCT images and a machine-learning framework, offering valuable insights for real-time in vivo characterization of ear infections.

Authors

Institutions

Publication Details

Journal
Journal of Biophotonics
Published
2024-08-05
DOI
https://doi.org/10.1002/jbio.202400075
Citations
4
Primary Topic
Ear Surgery and Otitis Media
Type
article
Field-Weighted Citation Impact
2.32

Funders

Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

Texture‐based speciation of otitis media‐related bacterial biofilms from optical coherence tomography images using supervised classification

Guillermo L. Monroy, Farzana R. Zaki, Stephen A. Boppart, Jindou Shi et al.
4 citations
Journal of Biophotonics
Ear Surgery and Otitis Media
2.32
article

Texture‐based speciation of otitis media‐related bacterial biofilms from optical coherence tomography images using supervised classification

Guillermo L. Monroy, Farzana R. Zaki, Stephen A. Boppart, Jindou Shi, Kavya Sudhir
article en
4 citations

Abstract

Otitis media (OM), a highly prevalent inflammatory middle-ear disease in children worldwide, is commonly caused by an infection, and can lead to antibiotic-resistant bacterial biofilms in recurrent/chronic OM cases. A biofilm related to OM typically contains one or multiple bacterial species. OCT has been used clinically to visualize the presence of bacterial biofilms in the middle ear. This study used OCT to compare microstructural image texture features from bacterial biofilms. The proposed method applied supervised machine-learning-based frameworks (SVM, random forest, and XGBoost) to classify multiple species bacterial biofilms from in vitro cultures and clinically-obtained in vivo images from human subjects. Our findings show that optimized SVM-RBF and XGBoost classifiers achieved more than 95% of AUC, detecting each biofilm class. These results demonstrate the potential for differentiating OM-causing bacterial biofilms through texture analysis of OCT images and a machine-learning framework, offering valuable insights for real-time in vivo characterization of ear infections.

Journal of BiophotonicsVol. 17(10)
University of Illinois Urbana-Champaign (US), Illinois College (US)
National Institutes of Health
Life in Land
Openalex Percentile: Top 12%
Ear Surgery and Otitis Media
2.32
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.

Texture‐based speciation of otitis media‐related bacterial biofilms from optical coherence tomography images using supervised classification — Guillermo L. Monroy, Farzana R. Zaki, et al. · Journal of Biophotonics (2024) | TGRS Research Map | TGRS