The cellular states and fates of shed intestinal cells

Single cell data for "The cellular states and fates of shed intestinal cells" paper. Folder: Count_tables and Objects<br> This folder contains BG subtracted UMI tables and metadata for both the fecal wash UMAP and the fecal/tissue enterocytes combined UMAP 1. BG_subtracted_count_table_all_Fecal_cells_before_filt.txt - BG subtracted UMI table of all cells before Seurat filtration and analysis <br> 2. BG_subtracted_count_table_all_Fecal_cells_after_filt.txt - BG subtracted UMI table of all cells after Seurat filtration and analysis.<br> 3. Metadata_all_Fecal_cells_after_filteration.txt - Metadata for "BG_subtracted_count_table_all_Fecal_cells_after_filt.txt"<br> 4. Combine_all_Fecal_cells_Obj.rds - Seurat Object for BG_subtracted_count_table_all_Fecal_cells_after_filt.txt<br> 5. BG_subtracted_count_table_all_Enterocytes_before_filt.txt - BG subtracted UMI table of all cells before Seurat filtration and analysis <br> 6. BG_subtracted_count_table_all_Enterocytes_after_filt.txt - BG subtracted UMI table of all cells after Seurat filtration and analysis.<br> 7. Metadata_all_Enterocytes_after_filteration.txt - Metadata for "BG_subtracted_count_table_all_Enterocytes_after_filt.txt"<br> 8. Combine_Enterocytes_Obj.rds - Seurat Object for BG_subtracted_count_table_all_Enterocytes_after_filt.txt Folder Codes<br> This folder contains unique codes used in the manuscript 1. segment_math_model.m - loads t_for_model<br> 2. t_for_model<br>

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Publication Details

Journal
Zenodo (CERN European Organization for Nuclear Research)
Published
2024-10-03
DOI
https://doi.org/10.5281/zenodo.8243077
Primary Topic
Digestive system and related health
Type
article
Field-Weighted Citation Impact
0.00
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article

The cellular states and fates of shed intestinal cells

Yael Korem Kohanim, Shalev Itzkovitz, Keren Bahar Halpern, Oran Yakubovsky et al.
Zenodo (CERN European Organization for Nuclear Research)
Digestive system and related health
article

The cellular states and fates of shed intestinal cells

Yael Korem Kohanim, Shalev Itzkovitz, Keren Bahar Halpern, Oran Yakubovsky, Ziv Shulman, Adi Egozi, Yotam Harnik, Adi Biram
article en

Abstract

Single cell data for "The cellular states and fates of shed intestinal cells" paper. Folder: Count_tables and Objects<br> This folder contains BG subtracted UMI tables and metadata for both the fecal wash UMAP and the fecal/tissue enterocytes combined UMAP 1. BG_subtracted_count_table_all_Fecal_cells_before_filt.txt - BG subtracted UMI table of all cells before Seurat filtration and analysis <br> 2. BG_subtracted_count_table_all_Fecal_cells_after_filt.txt - BG subtracted UMI table of all cells after Seurat filtration and analysis.<br> 3. Metadata_all_Fecal_cells_after_filteration.txt - Metadata for "BG_subtracted_count_table_all_Fecal_cells_after_filt.txt"<br> 4. Combine_all_Fecal_cells_Obj.rds - Seurat Object for BG_subtracted_count_table_all_Fecal_cells_after_filt.txt<br> 5. BG_subtracted_count_table_all_Enterocytes_before_filt.txt - BG subtracted UMI table of all cells before Seurat filtration and analysis <br> 6. BG_subtracted_count_table_all_Enterocytes_after_filt.txt - BG subtracted UMI table of all cells after Seurat filtration and analysis.<br> 7. Metadata_all_Enterocytes_after_filteration.txt - Metadata for "BG_subtracted_count_table_all_Enterocytes_after_filt.txt"<br> 8. Combine_Enterocytes_Obj.rds - Seurat Object for BG_subtracted_count_table_all_Enterocytes_after_filt.txt Folder Codes<br> This folder contains unique codes used in the manuscript 1. segment_math_model.m - loads t_for_model<br> 2. t_for_model<br>

Zenodo (CERN European Organization for Nuclear Research)
Yale University (US), Weizmann Institute of Science (IL)
Zero hunger
Openalex Percentile: Top 100%
Digestive system and related health
DOIOpen Access PDFOpenAlex
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The cellular states and fates of shed intestinal cells — Yael Korem Kohanim, Shalev Itzkovitz, et al. · Zenodo (CERN European Organization for Nuclear Research) (2024) | TGRS Research Map | TGRS