A Bayesian hierarchical model for disease mapping that accounts for scaling and heavy-tailed latent effects

In disease mapping, the relative risk of a disease is commonly estimated across different areas within a region of interest. The number of cases in an area is often assumed to follow a Poisson distribution whose mean is decomposed as the product between an offset and the logarithm of the disease's relative risk. The log risk may be written as the sum of fixed effects and latent random effects. A modified Besag-York-Mollié (BYM2) model decomposes each latent effect into a weighted sum of independent and spatial effects. We build on the BYM2 model to allow for heavy-tailed latent effects and accommodate potentially outlying risks, after accounting for the fixed effects. We assume a scale mixture structure wherein the variance of the latent process changes across areas and allows for outlier identification. We propose two prior specifications for this scale mixture parameter. These are compared through various simulation studies and in the analysis of Zika cases from the first (2015-2016) epidemic in Rio de Janeiro city, Brazil. The simulation studies show that the proposed model always performs at least as well as an alternative available in the literature, and often better, both in terms of widely applicable information criterion, mean squared error and of outlier identification. In particular, the proposed parametrisations are more efficient, in terms of outlier detection, when outliers are neighbours. Our analysis of Zika cases finds 23 out of 160 districts of Rio as potential outliers, after accounting for the socio-development index. Our proposed model may help prioritise interventions and identify potential issues in the recording of cases.

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Publication Details

Journal
Statistical Methods in Medical Research
Published
2024-12-10
DOI
https://doi.org/10.1177/09622802241293776
Citations
4
Primary Topic
Statistical Methods and Bayesian Inference
Type
article
Field-Weighted Citation Impact
2.84

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article

A Bayesian hierarchical model for disease mapping that accounts for scaling and heavy-tailed latent effects

Alexandra M. Schmidt, Laís Picinini Freitas, Oswaldo Gonçalves Cruz, Victoire Michal
4 citations
Statistical Methods in Medical Research
Statistical Methods and Bayesian Inference
2.84
article

A Bayesian hierarchical model for disease mapping that accounts for scaling and heavy-tailed latent effects

Alexandra M. Schmidt, Laís Picinini Freitas, Oswaldo Gonçalves Cruz, Victoire Michal
article en
4 citations

Abstract

In disease mapping, the relative risk of a disease is commonly estimated across different areas within a region of interest. The number of cases in an area is often assumed to follow a Poisson distribution whose mean is decomposed as the product between an offset and the logarithm of the disease's relative risk. The log risk may be written as the sum of fixed effects and latent random effects. A modified Besag-York-Mollié (BYM2) model decomposes each latent effect into a weighted sum of independent and spatial effects. We build on the BYM2 model to allow for heavy-tailed latent effects and accommodate potentially outlying risks, after accounting for the fixed effects. We assume a scale mixture structure wherein the variance of the latent process changes across areas and allows for outlier identification. We propose two prior specifications for this scale mixture parameter. These are compared through various simulation studies and in the analysis of Zika cases from the first (2015-2016) epidemic in Rio de Janeiro city, Brazil. The simulation studies show that the proposed model always performs at least as well as an alternative available in the literature, and often better, both in terms of widely applicable information criterion, mean squared error and of outlier identification. In particular, the proposed parametrisations are more efficient, in terms of outlier detection, when outliers are neighbours. Our analysis of Zika cases finds 23 out of 160 districts of Rio as potential outliers, after accounting for the socio-development index. Our proposed model may help prioritise interventions and identify potential issues in the recording of cases.

Statistical Methods in Medical ResearchVol. 34(2)
McGill University (CA), Fundação Oswaldo Cruz (BR), Université de Montréal (CA)
Institut de Valorisation des Données
Good health and well-being
Openalex Percentile: Top 11%
Statistical Methods and Bayesian Inference
2.84
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