Latest Research in Biomedical Text Mining and Ontologies

21 research papers · 2026 median publication year

Top Research Topics in Biomedical Text Mining and Ontologies

Highest-Cited Papers

  1. Biomedical Named Entity Recognition using Transformer-Based Approaches
  2. Biomedical Named Entity Recognition using Transformer-Based Approaches
  3. Biomedical Text Mining and Information Extraction Using Prompt-Enhanced and LoRA-Adapted Large Language Models
  4. Language-Model-Based Architecture for Automatic Concept Placement in Ontologies
  5. A Spatial Fay-Herriot Model when the Auxiliary Variables are based on Non-traditional Data
  6. NERFlow: A Workflow-Based Subsystem of FIT4NER for LLM-Assisted Medical Named Entity Recognition
  7. Factorized Hypothesis Search for Evidence-to-Taxonomy Retrieval
  8. Plausibility-Driven Prioritization of Candidate Biomedical Annotations
  9. ANCHOR-RE: An Agentic Neuro-Symbolic Framework for Grounded Biomedical Relation Extraction
  10. Neighborhood-Aware Dual Biomedical Entity Linking
  11. Generative AI and Foundation Models in Medical Image
  12. Few-Shot Biomedical Relation Extraction with Large Language Models: A Viable Alternative to Supervised Learning?
  13. Unifying biomedical knowledge in a modern multimodal graph
  14. CellExLink: End-to-end cell-type recognition and normalization in biomedical text
  15. MetaboT: an LLM-based multi-agent framework for interactive analysis of mass spectrometry metabolomics knowledge graphs
  16. Declining helmet use and emerging electric vehicle injuries among pediatric patients presenting with micromobility accidents: A single-center analysis
  17. Omics Data Discovery Agents: Agent-Supported Retrieval, Reanalysis, and Synthesis of Published Omics Data
  18. Benchmarking Resource-Efficient LLMs for Research Topic Ontology Generation in the Biomedical Field
  19. Extracting Biomedical Entities from Clinical Records: A Comparative Study of Large Language Model Approaches
  20. An efficient AI-assisted approach for retrieving knowledge of polymer biodegradability from a corpus of publications
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2026 AUG Q2

Biomedical Text Mining and Ontologies

21 papers

Top Topics (10)

Biomedical Text Mining and Ontologies5
Computation and Language3
Topic Modeling2
Methodology1
Quantitative Methods1
Information Retrieval1
Computer Vision and Pattern Recognition1
Artificial Intelligence1
Metabolomics and Mass Spectrometry Studies1
Injury Epidemiology and Prevention1

Top Publications (20)

1.Biomedical Named Entity Recognition using Transformer-Based Approaches2.Biomedical Named Entity Recognition using Transformer-Based Approaches3.Biomedical Text Mining and Information Extraction Using Prompt-Enhanced and LoRA-Adapted Large Language Models4.Language-Model-Based Architecture for Automatic Concept Placement in Ontologies5.A Spatial Fay-Herriot Model when the Auxiliary Variables are based on Non-traditional Data6.NERFlow: A Workflow-Based Subsystem of FIT4NER for LLM-Assisted Medical Named Entity Recognition7.Factorized Hypothesis Search for Evidence-to-Taxonomy Retrieval8.Plausibility-Driven Prioritization of Candidate Biomedical Annotations9.ANCHOR-RE: An Agentic Neuro-Symbolic Framework for Grounded Biomedical Relation Extraction10.Neighborhood-Aware Dual Biomedical Entity Linking11.Generative AI and Foundation Models in Medical Image12.Few-Shot Biomedical Relation Extraction with Large Language Models: A Viable Alternative to Supervised Learning?13.Unifying biomedical knowledge in a modern multimodal graph14.CellExLink: End-to-end cell-type recognition and normalization in biomedical text15.MetaboT: an LLM-based multi-agent framework for interactive analysis of mass spectrometry metabolomics knowledge graphs16.Declining helmet use and emerging electric vehicle injuries among pediatric patients presenting with micromobility accidents: A single-center analysis17.Omics Data Discovery Agents: Agent-Supported Retrieval, Reanalysis, and Synthesis of Published Omics Data18.Benchmarking Resource-Efficient LLMs for Research Topic Ontology Generation in the Biomedical Field19.Extracting Biomedical Entities from Clinical Records: A Comparative Study of Large Language Model Approaches20.An efficient AI-assisted approach for retrieving knowledge of polymer biodegradability from a corpus of publications
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